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Engaged in the Modeling and Analysis of Self Assembly

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June 20, 2008

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Self Assembly and Molecular Computing

Advances in chemical synthesis have laid the groundwork for computation at nanoscale, where self assembly becomes the core process, either as a computation itself, or as a mechanism for fabricating nanodevices. By such processes, elementary particles, such as DNA molecules, perform computations by assembling autonomously into large complexes following built-in bonding rules. The MASA group studies self assembly viewed as a random growth process, addressing such as questions as:``How long does the structure corresponding to a given computation take to self-assemble?'' ``How does one optimize the yield of a self-assembly process?'' ``What are the trade-offs between the reliability (error tolerance) and speed of self assembly?'' Answers to these questions bring out unexpected connections with classical areas of mathematics . The outline of a tutorial to be given at Performance 2007 can be found in

Tile Assembly

Figure 1. Tile Assembly.

Parity

Figure 2. Parity.

Generating Tape

Figure 3. Generating Tape.

Self Organizing Sensor System

Self Assembly in File