Self Assembly and Molecular Computing

Baryshnikov, Y., Coffman, E.G., Jr., Momcilovic, P., "Phase Transitions and Control in Self Assembly", Proceedings, Foundations of Nanoscience: Self-Assembled Architectures and Devices, Snowbird, 2004.

Baryshnikov, Y., Coffman, E.G., Jr., Momcilovic, P., "Incremental Self Assembly in the Fluid Limit", Proceedings, 38th Ann. Conf. Inf. Sys. Sci., Princeton, 2004.

Baryshnikov, Y., Coffman, E.G., Jr., Momcilovic, P., "DNA-Based Computation Times", Proceedings of the 10th International Meeting on DNA Computing, Milan, Italy, June 2004.

Baryshnikov, Y., Coffman, E.G., Jr., Seeman, N., Yimwadsana, B., "Self Correcting Self Assembly: Growth Models and the Hammersley Process", Proceedings of the 11th International Meeting on DNA Computing, London, Ontario, 2005.

Baryshnikov, Y., Coffman, E.G., Jr., Yimwadsana, B., "Stochastic Yield Analysis of Self-Assembling, Single-Enzyme Reaction Networks", Proceedings, Foundations of Nanoscience: Self-Assembled Architectures and Devices, Snowbird, 2005.

Baryshnikov, Y., Coffman, E.G., Jr., Yimwadsana, B., "On Creating Shapes in 2D Tile Self-Assembly", Proceedings, Foundations of Nanoscience: Self-Assembled Architectures and Devices, Snowbird, 2006.

Baryshnikov, Y., Coffman, E.G., Jr., Yimwadsana, B., "Times to Compute Shapes in 2D Self Assembly", Proceedings of the 12th International Meeting on DNA Computing, 2006.

Baryshnikov, Y., Coffman, E.G., Jr., Yimwadsana, B., "Experiments in Stochastic Self-Assembly", Proceedings, Foundations of Nanoscience: Self-Assembled Architectures and Devices, Snowbird, 2007.

Self Organizing Sensor System

Barshnikov, Y., Coffman, E.G., Jr., Kwak, K. J., "High performance sleep-wake sensor system based on cyclic cellular automata", Proceedings, International Conference on Information Processing in Sensor Networks. ACM/IEEE IPSN, April 2008

Kwak, K. J., Barshnikov, Y., Coffman, E.G., Jr., "Cyclic cellular automata: A tool for self-organizing sleep scheduling for sensor networks", Proceedings, International Conference on Information Processing in Sensor Networks. ACM/IEEE IPSN, April 2008 (Demo Paper)

Kwak, K. J., Barshnikov, Y., Coffman, E.G., Jr., "Self organizing sleep-wake sensor system", in submission

Self Assembly in File-Sharing Network

Constantinides, A., Coffman, E.G. Jr., "Optimal seamless self-assembly of files in linear networks", Optimization Letters, Volume 1, Number 2, March 2007, Springer Berlin / Heidelberg