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:: Dimitris Anastassiou
Dimitris Anastassiou
Professor
Phone: 212-854-3113 Background Dimitris Anastassiou is Professor and Director of Columbia
University's Genomic Information Systems Laboratory, and a member of Professor Anastassiou joined the E.E. faculty in 1983. From 1979
until 1983, he was a Research Staff member at the Education o
1979 Ph.D., University of
California, Berkeley o
1975 M.S., University of
California, Berkeley o
1974 Diploma, National
Technical University of Athens, Greece Selected Recent Publications ·
J. Watkinson, K.C. Liang, X. Wang,
T. Zheng and D. Anastassiou, "Inference of regulatory gene interactions from expression
data using three-way mutual information," Annals of the New York Academy of Sciences, invited paper as best performer in a
DREAM2 network inference challenge, in press, 2008. ·
K.C. Liang, X. Wang and
D. Anastassiou, "A sequential Monte Carlo Method for Motif Discovery," IEEE Transactions on Signal Processing, Vol. 56, No. 9, September 2008, pp. 4496-4507. ·
J. Watkinson, X. Wang, T. Zheng and D. Anastassiou,
"Identification of gene interactions associated with disease from gene expression
data using synergy networks,," BMC Systems Biology, Vol. 2,
Issue 10, February 2008. [Highly
accessed] ·
K.C. Liang, X. Wang
and D. Anastassiou, "A Profile-Based Deterministic Sequential Monte Carlo Algorithm for
Motif Discovery," Bioinformatics, Vol. 24, Issue 1, January 2008, pp. 46-55. ·
K.C. Liang, X. Wang
and D. Anastassiou, "Bayesian basecalling for DNA sequence analysis
using hidden Markov models," ACM/IEEE Transactions on Computational
Biology and Bioinformatics, Vol. 4, No. 3, July-September 2007, pp. 430-440. ·
D. Anastassiou,
"Computational
Analysis of the Synergy Among Multiple Interacting Genes" (Review
Article), Molecular Systems Biology, Vol. 3, No. 83, February 2007. ·
V. Varadan, D. Miller III and D. Anastassiou, "Computational
Inference of the Molecular Logic for Synaptic Connectivity in C. elegans,"
Bioinformatics, Vol. 22, Issue 14 – ISMB 2006, pp. e497-e506, July 2006. ·
V. Varadan and D. Anastassiou, "Inference of
Disease-Related Molecular Logic from Systems-Based Microarray Analysis,"
PLoS Computational Biology, Vol. 2, Issue 6, June
2006, pp. 585-597. ·
D. Anastassiou, H. Liu and V. Varadan, "Variable Window Binding for
Mutually Exclusive Alternative Splicing," Genome Biology, Vol. 7,
Issue 1, pp. R2.1-R2.12, January 2006. [Highly
accessed] ·
G. Cavelier and D.
Anastassiou, "Phenotype Analysis Using Network Motifs Derived from
Changes in Regulatory Network Dynamics," Proteins, Vol. 60, Issue 3, pp.
525-546, 2005. ·
X. Wang, D. Anastassiou and D. Guo,
"Statistical Inference of Transcriptional Regulatory Networks," in
Genomic Signal Processing and Statistics, E. Dougherty et al. (Ed.), Hindawi Pub., ·
D. Sussillo, A. Kundaje and D. Anastassiou, "Spectrogram
Analysis of Genomes*," EURASIP Journal on Applied
Signal Processing, special issue on Genomic Signal Processing, Vol. 2004, No.
1, Jan. 2004, pp. 29-42. ·
G. Cavelier and D. Anastassiou,
"Data-Based Model and Parameter Evaluation in Dynamic Transcriptional
Regulatory Networks," Proteins, Vol. 55, Issue 2, pp. 339-350, 2004. ·
D. Anastassiou, "Genomic Signal Processing,"
IEEE Signal Processing Magazine theme article, vol. 18, No 4, July 2001, pp.
8-20. ·
D. Anastassiou, "Frequency-Domain Analysis of
Biomolecular Sequences," Bioinformatics, vol. 16, no. 12, December 2000,
pp. 1073-1081. Some publications from
previous lifetime *Download SpectroFish,
a software tool producing spectrograms for visualizing periodicity and
relative nucleotide content in DNA. Department of Electrical Engineering, 1328 S.W. Mudd
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